Jieran S.

icon location Lausanne, Switzerland icon location Every single cell matters. PhD stu @CHUV/UNIL

Results 3 issues of Jieran S.

Scale data in Visium tutorial? #question

Couldn't find anything in exisitng/closed issue so I asked here. Thank you for implementing those concise yet comprehensive tutorials. In [Visium data processing tutorial](https://scanpy-tutorials.readthedocs.io/en/latest/spatial/basic-analysis.html), no scaling was done before PCA...

Boxplot orientation for `left_annotation`

4 comment

> **Is your feature request related to a problem? Please describe.** When plotting left boxplot annotation, even if I set the variable as suggested in the tutorial, the boxplot annotation...

Error message return wrong input argument

https://github.com/Kumquatum/GWENA/blob/cff602da716700b94548c964a752368d8a4e60c3/R/biological_integration.R#LL344C1-L347C23 In the R/biological_integration.R line 344-347 (as referred to above), the returned error should not be eigengene content but the phenotype content. This gives me quite some confusion when the...