pubtrends
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JetBrains-Research
Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers
Even with the predefined examples like "human aging" there can be performance issues while rendering papers graph
``` [2022-06-02 04:03:50,890: INFO/MainProcess] Received task: analyze_search_terms[5a3f682d-4a5a-4f1b-b64f-73f72e7e16f3] [2022-06-02 04:03:50,892: INFO/ForkPoolWorker-2] Analyzing search query [2022-06-02 04:03:50,893: INFO/ForkPoolWorker-2] Searching 1000 most cited publications matching "pan genome" software [2022-06-02 04:03:51,237: INFO/ForkPoolWorker-2] Found 2...
``` Caused by: java.sql.BatchUpdateException: Batch entry 0 INSERT INTO pmpublications (abstract, aux, doi, keywords, mesh, pmid, title, type, "year") VALUES ('The experience of eating is inherently multimodal, combining intraoral gustatory,...
Keyword frequencies For each year we show a number of papers containing most frequent keywords. NOTE: the plot is slightly smoothed.
query: eeg neurofeedback database: Pubmed Pubmed syntax was enabled, all other params set to their defaults
Investigate potential memory leak It happens after service startup, i.e. model loaded and precomputed tasks are executed.
Check year! 
- [ ] Citation Context Classification: show relationships between papers / subtopics - [ ] Data Availability Statement: some papers may not have associated links to datasets, but have a...
At the moment we use threshold to limit Pubmed API result list, but not all of the ids may present in the local database, so actual number of analysed papers...
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Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers