JennyCNS

error regarding vcf file from PoolSNP

3

Hello, I am trying to run grenedalf frequency on my vcf file generated by PoolSNP from an mpileup file using ``` GRENEDALF=/gxfs_home/geomar/smomw573/software/grenedalf/bin/grenedalf VCF=/gxfs_home/geomar/smomw573/work/seasonal_adaptation/analysis/PoolSNP/finalfile.vcf.gz GENOME=/gxfs_work1/geomar/smomw573/seasonal_adaptation/genome/Eaffinis.Baltic.PseudoRef.Mar22.fasta \ OUTPUT=/gxfs_home/geomar/smomw573/work/seasonal_adaptation/analysis/grenedalf-freq $GRENEDALF frequency --vcf-path $VCF...