Zhi-Jie Cao

Great to hear that! For protein measurements in CyTOF, I would recommend adding protein vertices connected to their corresponding genes in the guidance graph. One more thing to consider is...

Thanks for the report! The scripts in `/GLUE/tree/master/experiments/RegInf` include comparisons with other regulatory inference methods which are unnecessary for end users, and cannot be run as is. In this case...

Of course! I'll let you know. For the second question, the GLUE training process ensures that smaller objects is upsampled to match bigger objects, so I think there is no...

You are welcome! The new tutorial requires an updated version (v0.3.0) of scglue. I've released it on PyPI, but still having some problems with the bioconda update. Hopefully I can...

Thanks for your interest in GLUE! Currently there is no tutorial for `PairedSCGLUEModel` yet. I will add one and let you know when it's ready.

Hi there! The [tutorial](https://scglue.readthedocs.io/en/latest/paired.html) is finally available. Please be advised that you need the latest version (v0.3.2) of scglue to use it.

Well this situation a bit awkward. The `integration_consistency` involves computing feature-feature correlation. For the most common RNA & ATAC data, we need to preprocess the count data in a particular...

Sorry for the late response! Starting from v0.3.0, [`scglue.models.integration_consistency`](https://scglue.readthedocs.io/en/latest/api/scglue.models.dx.integration_consistency.html) now works with non raw-count data. Nevertheless, you may need to specify appropriate "metacell" aggregation and preprocessing functions via arguments "agg_fns"...

Thanks for your interest in GLUE! We haven't tested the model on spatial data yet, but I think either way should work. You may try the latter first (build a...

Thanks for your interest in Cell BLAST and the detailed explanation! Given the above information, I can think of two potential fixes: 1. One possibility is that the model has...