Jean Mainguy
Jean Mainguy
This pull request adds an optional additional column to the General Stats table of '% Mapped Reads' in BAM file. This percentage can be useful to evaluate exhaustivity of metagenomics...
### Description of feature Hello, I would like to display the percentage of mapped reads given by samtools flagstat results in the general stat table. This value is already parsed...
PPanGGOLiN has a CI that tests most of its commands and parameters to make sure that none are broken. However, it does not test the content of the file created...
PPanGGOLiN encountered issues when handling joined coordinates present in input annotation files (GFF or GBFF). Such annotations were disregarded when encountered in GBFF files and improperly managed in GFF files....
It would be great if PPanGGOLIN could continue running even when the partition step fails, as it can still deliver valuable data like core and soft genomes. Originally, this scenario...