James Glover comments

Results 57 comments of


                                            James Glover

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

# Data Integrity ## Country of origin 6563426 samples have no (NULL) data in the field There are 471 different values, while a lot of these appear to be valid...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

# Exposure ## Country of origin ### Internal - Country of origin is exposed in the warehouses, and via the V1 API - Country of origin is not currently exposed...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

# Exceptions The EBI provide scope for exceptions https://www.ebi.ac.uk/about/news/technology-and-innovation/ena-new-metadata > Although the spatio-temporal information will become mandatory in most cases, some exceptions will be allowed when it is deemed necessary...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

# ENA Requirements The current default requirements are available here: https://www.ebi.ac.uk/ena/browser/view/ERC000011 No fields, including geographic data are currently flagged as required on the base checklist. ## Country of origin From...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

# Synopsis of progress - It seems prudent to wait for the additional communication promised before April 1st before making substantial changes - We currently collect all the required information...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

# Draft RFC ## RFC: Proposed changes to multi-lims warehouse sample table Feedback can be contributed via the github discussion [Link] or directly via email. In order to improve the...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

Now I've got the full list pulled down I've found 309 different values which cannot be mapped back to countries from the valid list. I've decided before touching any of...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

Having a bit of trouble handling dates: 1) Excel is a bit of a pain, and even setting a column to a date-type allows nonsense input 2) You can get...

DPL-211 As a Compliance Manager (Catherine M) I would like the country of origin added to the sample metadata submitted for accessioning so that we comply with the Nagoya protocol (C=M, V=4)

Checking with the EBI if they mind us redistributing the XML, as it would simplify the process and reduce our load on their systems.