James Santangelo

icon indicating a website link https://james-s-santangelo.github.io/ icon indicating an email [email protected]

icon location Berkeley, CA icon location Miller Postdoctoral Fellow in Rasmus Nielsen's lab in the Department of Integrative Biology at UC Berkeley

Results 2 comments of James Santangelo

The format of gdistkey file?

Hey all, I ran into the same issue. It looks like gdistkey is set to `None` when the VCF is loaded, regardless of what key is passed. In other words,...

LDhat Error in locs file: SNPs must be montonically increasing

This error is occurring because the site positions in the *.locs* file are not ordered. You can fix this error by making sure the initial VCF processed by `vcftools` is...