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                                            JakeHagen

Error Reading gencode.v38.genes.json.gz File in SvAnna CLI Tool

I was having this issue but it was fixed by using 2304 version of the data zip. I was previously using the 2204 version because I was given an error...

Skips all het SNV sites because deepvariant uses Number=A for the VAF format field.

Hi Luis, thank you for your response Attached are two test vcfs. They have only one identical variant. The only difference is the FORMAT VCF header line ie: `##FORMAT=` vs...