Jacopo Teneggi comments

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                                            Jacopo Teneggi

Neuron Trace class features

Hi! I think @tathey1 cover all of my ideas too. My only note is about converting `DataFrame`s to `Graph`s: there is this method https://github.com/neurodata/brainlit/blob/695c303d480dc3971ab1edcf64009311827cc5a1/brainlit/utils/swc.py#L349-L394 which relies on: - methods such...

Cannot understand how `swc` files are pre-processed for upload on S3

I would have to check. Even with the .swc files we had to remove some duplicate nodes, so my guess is that a series of actions led to different representations,...

Cannot download .swc files for axon_geometry experiments

Hi! Thank you for reporting this issue. It seems to be working on my laptop, so it could be an AWS initialization/authorization error. Could you please provide the console output...

Cannot download .swc files for axon_geometry experiments

Yes it definitely can, and should

Don't use local s3 data for tests, use open-neurodata with `use_https=True`

The use of `use_https=True` has proven to break CloudVolume on versions of python later than 3.8.5 . Initially, we thought it was an issue limited to versions later than 3.9.0...

Don't use local s3 data for tests, use open-neurodata with `use_https=True`

Not currently @tathey1 I saved the data for tests in data/ . I can access things directly with boto, but not through cloudvolume

Don't use local s3 data for tests, use open-neurodata with `use_https=True`

@bvarjavand , @tathey1 and I were discussing this idea: saving some service account credentials on CircleCI as environmental variables and add a step to the pipeline that will save the...

[ndd] Convert docker image to singularity image

Hi! I tried running `singularity shell docker://neurodata/brainlit:latestDocker image path: index.docker.io/neurodata/brainlit:latest` on MARCC and the container is initialized correctly: ``` Creating container runtime... Exploding layer: sha256:6ec8c9369e08152361a01729f2c8a1e7aae898426c6e67267f41894bf9524827.tar.gz Exploding layer: sha256:401b5acb42e6784f873065f40787ef99fe6e18032e4a5a752699dde7c85af4c1.tar.gz Exploding layer:...