JYLeeBioinfo

Hi @adamnovak I got a similar error message but I don't have NON_REF in my error message ( I skipped some points since it was too long) ``` Restricting to...

Thank you for kind reply, Erik! This error was gone after applying --flat-alts

Hello, The same error here. I found out that the ol.matrix.2 is defined before the problematic line only when the combine mode is off. In the other cases, ol.matrix.2 is...

Any update on this issue? I also think writing large numbers as exact integers is needed, at least as an option.

@camelest I tried [bamCoverage](https://deeptools.readthedocs.io/en/develop/content/tools/bamCoverage.html) in deepTools. It generates binned bigwigs, which were sufficient for my purpose. But if you need single bp resolution, the deepTools would not be the option

Thank you for sharing your troubleshooting! I experienced the same problem. In my case, I tried making a custom function that resembles gdc_rnaseq to fix it without re-installation. .htseq_importer function...

Exactly same issue here, with bioconda build... I have just settled with running multiple times up to the number of reads intended.

Hi @ArtRand I also got no result files after running the test command. 1) I removed -p option since it is commented in the python scripts 2) I removed options...