Evgenii

Mixed numberOfChannels

4

- empty pixelData case is corrected (SR modality) - _numberOfChannels is removed from model.series (isn't used, stacks may have different values in one series) - stack._numberOfChannels is equal to max...

- model.stack.orderFrames() is changed - model.series.orderStacks() is added - numberOfFrames is removed from merge()

Unsupported DICOM file

8

### Description [Unsupported file](https://github.com/FNNDSC/ami/files/1902768/parse.error.window.not.defined.zip) This file contains a valid CT - Patient Protocol #### Steps to Reproduce [AMI](https://fnndsc.github.io/ami/#viewers_upload) returns frame._pixelData contains only zeros after parsing and shows black image. [cornerstoneWADOImageLoader](https://rawgit.com/cornerstonejs/cornerstoneWADOImageLoader/master/examples/dicomfile/)...

[bug] orderFrames and multi frame DICOM files

6

### Description Frames in stack can not be ordered correctly after merging 2+ multi frame DICOM files #### Steps to Reproduce For example, take 2 US Cardio multi frame DICOM...

Incorrect world coordinates for incomplete series

3

### Description AMI may return incorrect world coordinates for incomplete series (if some from series are missing) #### Steps to Reproduce Take CT series with 100 files (frames). Delete second...

Use pixel ratio in StackHelper borders and LocalizerHelper

8

Got **StackHelper** and **LocalizerHelper** strange behavior when loading AMI with different browser zoom. In my code I have this (taken from examples): ``` ...stackHelper.slice.canvasWidth = ...clientWidth; ...stackHelper.slice.canvasHeight = ...clientHeight; ```...

Wrong behavior in mergeSeries

1

### Description I have a CT series with 67 frames. First frame in series  is in axial projection and shows how slices was made by machine (each ~horizontal line...