J. Rodrigo Flores

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icon company Genomics Institute icon location Tartu, Estonia icon location Human Evolutionary Genetics, Genomics, Bioinformatics, Data Science

Results 3 issues of J. Rodrigo Flores

inclusion of 'D raw' calculation

I'm interested in calculating linkage disequilibrium in its 'non-standardised' form, which in literature is often referred as simply D. I have done it using your LDBlockShow tool from VCFs and...

Mixed haploid and diploid genotypes in the release VCF from the Diversity Panel

1 comment

Hi, To report the presence of both haploid and diploid genotypes in the output from GVCF Genotyper Version: 2.1.0. The file is merged.vcf.gz dowloaded from BaseSpace. Since these are human...

Dependency issue with the Logolas library

2 comment

Hi, I'm using R version 3.5.2. The installing of the Logolas library fails due to the fact that one of its dependencies, ashr, [has now been removed](https://cran.r-project.org/web/packages/ashr/index.html) from CRAN. I...