JRS92
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JRS92
To align an image to a reference atlas I used [ABBA](https://github.com/BIOP/ijp-imagetoatlas) to apply some transformations via elastix and bigwarp. I then exported the registrations to QuPath where I can see...
In the [Aligning partial coronal brain sections with the Allen Brain Altas](https://jef.works/STalign/notebooks/starmap-allen3Datlas-alignment.html) >The scale parameters refer to a scaling of the atlas in (x, y, z) to match the size...