Jack Fu

icon location Baltimore, MD

Results 15 comments of Jack Fu

basemeans in simulate_experiment when num_rep == 1

Hi Tim. Let me look into this. It’s likely a case of updates not being pushed on my end successfully to the bioconductor build. Thanks!

Trouble changing size parameter

Hey there, the documentation for that function describes the following for size ` the negative binomial size parameter (see NegBinomial) for the number of reads drawn per transcript. If left...

Time and memore requirements

Hey Mick I will look into the reportcoverage run times

Error in seq_gtf(gtf, seqpath, ...) : unused argument (readlen = 70)

@nickschurch Hey Nick, try installing again from the devel branch using BioC. Please let me know if it has since been resolved. Will also update the release branch if confirmed...

Problem loading tablemaker output into R using Ballgown

Can you show a snippet of the column and row names for the i_data.ctab object that tablemaker created? What are your sample ids?