JLewisMicro

 [log_2022-06-28_17-33-32.txt](https://github.com/Nesvilab/FragPipe/files/9006249/log_2022-06-28_17-33-32.txt) Hi Fengchao, Thanks for the suggestion. I changed that setting yesterday to 3 and it did not filter out the data (all other settings were the same as...

Hi Fengchao, Where can I find the number of peptide ion counts? I've looked in some of the different output files and I can't find them. I'm happy with the...

Hi Fengchao, I've gone back through my previous run, and adjusting the mio ions to 2 did remove the protein in the MaxLFQ intensity, but not the standard intensity. Is...