Jeffrey Chiu

Found in the explanation of per-read coverage section

Hi hifiasm community, I am looking to assemble a genome using single-sample hifiasm (HiC). From my understanding, it's best to use HiC reads from the same sample/individual from which the...

Application to primary assembly

1

Hi developers, Thank you for this clean, powerful tool. Would this tool be applicable to primary assemblies?

Hi @inumanag , Just wanted to say that from my testing a small proportion of the the segdup links in bedpe output are exact duplicates. For example something like: chr1...

What to do with braker3 gff3, aa output? blastP?

5

Hi Developers, Thanks for this remarkable tool. I am new to genome annotation so apologize for my naievete. This is a general question for someone trying to fully annotate their...

Is pseudogene transferred

2

Hi team, Examining my newly liftOff annotation onto my newly assembled genome, I found that none of the pseudogenes from the previous assembly have been liftOver to the new assembly....