John Wolters

Hi, Thanks for the info about the temporary contigs, I can at least try to rescue the assembly from there. I tried the alternative seed and got an error: "Quantifier...

I gave 3.3 a try and it did prevent it from erroring out in the same way. The assembly was still killed for reasons that aren't clear. The error log...

The reads files are 931 MB each with about 1.78 million read pairs. Its strange that it appears to end while trying to assemble an additional large contig after already...

Yes, those are the reads for this assembly. Please give it a shot, any assistance would be greatly appreciated. I learned a little more about the job scheduler I'm using...

I'm getting 1.1 GB per file (333 MB gzipped) for the reads from SRA. edit: I've confirmed there is no discrepancy between the SRA reads and the local version of...

I ran the assembly again and received an error similar to the one I previously got with NOVOPlasty3.2.pl. "Quantifier follows nothing in regex; marked by

Hello, I ran another test using 3.4 and it appears to be having similar memory issues. In this case it reached 170GB memory usage before being killed by the job...