Jiang Feng

Allele specific analysis for human with out phased genome data

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Hello Nicholas Firstly thanks for developing this tool, it's really helpful! Now I have Hi-C data from one individual, and I want to compare the contacts between two alleles (to...

The labels of result array?

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Hello, I got the result from predict_no_y.py, and the result .npy file was a Nx3 array (1,2,0 three labels in the trained model). And I have two quetions:  1....

Can’t generate NEPDF data for the example sc-RNA seq data

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Hello! I have a new problem: The get_xy_label_data_cnn_combine_from_database.py report an error when generate NEPDF data for the example sc-RNA seq h5 file `python CNNC/get_xy_label_data_cnn_combine_from_database.py \ None \ CNNC/data/sc_gene_list.txt \ CNNC/data/dendritic_gene_pairs_200.txt...

What's the meaning of "data separation index list" file?

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Hello! I want to predict some TF-target gene pairs with CNNC. However, I'm confused with the function of "data separation index list" file in section 7.2 and 8.2. The annotation...

Hello, Thanks for developing this convenient tools! But I ran into some problems. It seems like no option to add a main title for the figure in _locuscompare_, which is...