MUDAN
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JEFworks
Multi-sample Unified Discriminant ANalysis
Bumps [tzinfo](https://github.com/tzinfo/tzinfo) from 1.2.5 to 1.2.10. Release notes Sourced from tzinfo's releases. v1.2.10 Fixed a relative path traversal bug that could cause arbitrary files to be loaded with require when...
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Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.8 to 1.13.6. Release notes Sourced from nokogiri's releases. 1.13.6 / 2022-05-08 Security [CRuby] Address CVE-2022-29181, improper handling of unexpected data types, related to untrusted inputs to...
Bumps [addressable](https://github.com/sporkmonger/addressable) from 2.5.2 to 2.8.0. Changelog Sourced from addressable's changelog. Addressable 2.8.0 fixes ReDoS vulnerability in Addressable::Template#match no longer replaces + with spaces in queries for non-http(s) schemes fixed...
Hi, I'm recently following [this tutorial](http://htmlpreview.github.io/?https://github.com/immunogenomics/harmony/blob/master/docs/mudan.html) to get familiar with the functions in the MUDAN package. However the embeddings from Rtsne:: Rtsne could not be reproduced very well: if it...
I have a matrix of data (dat.mat) with features in rows and cells in columns. Per the documentation for the `getComMembership` function, clustering this matrix should give labels over the...
Hi, I was wondering that why the PC calculation for the expression matrix in the MUDAN is `a
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.8 to 1.13.9. Release notes Sourced from nokogiri's releases. 1.13.9 / 2022-10-18 Security [CRuby] Vendored libxml2 is updated to address CVE-2022-2309, CVE-2022-40304, and CVE-2022-40303. See GHSA-2qc6-mcvw-92cw for...
Bumps [addressable](https://github.com/sporkmonger/addressable) from 2.5.2 to 2.8.1. Changelog Sourced from addressable's changelog. Addressable 2.8.1 refactor Addressable::URI.normalize_path to address linter offenses (#430) remove redundant colon in Addressable::URI::CharacterClasses::AUTHORITY regex (#438) update gemspec to...
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.8 to 1.14.3. Release notes Sourced from nokogiri's releases. 1.14.3 / 2023-04-11 Security [CRuby] Vendored libxml2 is updated to address CVE-2023-29469, CVE-2023-28484, and one other security-related issue....