J_A

Overlap of NUM.SNPS/NUM.READS between different mixed sample results

2

Thank you for developing this tool! I've run both demuxlet and freemuxlet (using 1000g-based common variant vcf as suggested, including optimization suggested by [https://github.com/aertslab/popscle_helper_tools]. I've used them for different mixed...

Question on angle

1

Hi, Thanks for developing this nice package! I didn't see a simple answer, and maybe this was not the point of this package, but isn't there a simple way to...

Dear Pando team, I would like to use a complementary set of distal peaks to the "GREAT" peak selection methods (https://quadbio.github.io/Pando/articles/association.html). To do this, does the infer_grn() function accept both...

Issues with sketching and Mapquery label transfer

5

Hi Seurat team, I've noticed an issue that using a sketched object silently generates weird results in TransferData part of Mapquery() (seurat v5). Context: I've run sketching on a reference...

Package dependencies not installed

3

Hi team, Thank you for developing this nice tool! I tried to install it using conda with r 4.5: `conda create --name r_env_bioc r-base r-essentials conda-forge::r-biocmanager` Then sucessfully installed decoupleR:...