IsoNet

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RuntimeError: No GPU detected, Please check your CUDA version and installation

7

Hi, I met this problem during refine step even if I downloaded the right tensorflow-gpu version. **10-20 11:26:01, INFO ######Isonet starts refining###### 10-20 11:26:05, ERROR No GPU detected, Please check...

Pengxin1028

'Generate Mask' by GUI not working

3

After running HIV data tutorial, I am trying neuronal synapse data tutorial. I could run commandline tutorial up to refine well. However, when I used GUI, I can't see any...

kimdn

Refine, FileNotFound error if there is '.' in the name of the tomogram

2

Dear IsoNet maintainers, When having a '.' (except for the one right before the file-extension) in the name of the tomogram, refine will fail with a file not found error....

rkjensen

No compatibility with NumPy > 1.23

1

I just wanted to let everyone know that we ran into an error regarding a deprecation from NumPy: ``` File IsoNet/util/noise_generator.py", line 110, in simulate_noise res = p.map(part_iradon_nofilter,sinograms) File "lib/python3.9/multiprocessing/pool.py",...

Pfirsichriegel

Isonet stops after a few iterations at time for refinement

8

Hi, I have been having recent issues with isonet where it will run fine for a few iterations during refinement and at some during Noise level estimation it will just...

jake4844

No such file or directory: results

3

Hi I followed your tutorial steps except using my data. I gave it several tomograms, preprocessed as you describe, then ran refine on the HPC. It runs for about 3...

DrJesseHansen

Can't insert a file

3

Can't insert a file here

jsingh007

Errors during refine

5

Hello everyone, I've been running into difficulties running Isonet's refinement and was hoping to find some assistance. To give some background details, I'm trying to correct for the missing wedge...

schmitbp

System seemed stopped during refine

8

Hi there, I am a student new to cryo-EM. I am now trying to apply IsoNet on the analysis of my data and I have encountered a problem. I found...

ChrisLoSK

Windows10 failed launch isonet.py

1

Hi, I have a problem when I follow `3. Add environment variables:` on my Windows10 machine, with git bash tool. The problem is that after I cautiously rename the **'IsoNet'**...

ghost