ITKColorNormalization

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[Feature request] Provide python wrapper / implementation to obtain stain matrix and concentrations only from image

2

Hi all, First of all, great work with this package! It is amazing how fast it can work and produce stain normalization, great work! A bit of background: I have...

guillermojp

Allow Python to catch errors

2

The current use of `itkAssertOrThrowMacro` to report errors, such as inputs that cannot be processed, is not caught by a Python `try`-`except` block. We want a solution where the Python...

Leengit

Output separate images for Hematoxylin and Eosin.

1

This issue is motivated by https://discourse.itk.org/t/itk-error-hematoxylin-and-eosin-are-getting-mixed-up-failed/4767/36 To be determined: 1. Should these images be produced always or only at the user's request? Tentative answer: only if requested. Incrementally they are...

Leengit

Expose test's #if as command line parameter

2

If the else part works, this [#if](https://github.com/InsightSoftwareConsortium/ITKColorNormalization/blob/805e28e2bdfdfbf0bf562e10ca2596243f056782/test/itkStructurePreservingColorNormalizationFilterTest.cxx#L117) should be exposed as a command line parameter and invoked as a new [test case](https://github.com/InsightSoftwareConsortium/ITKColorNormalization/blob/805e28e2bdfdfbf0bf562e10ca2596243f056782/test/CMakeLists.txt#L9).

dzenanz

## Step to reproduce 1. Open https://mybinder.org/v2/gh/InsightSoftwareConsortium/ITKColorNormalization/8b61138b70d780763c3aeac909c27a3026887d2e 2. Go to `examples` and open the notebook 3. Menu `Cell` -> `Run All` Execution of cell with `view(input_image)` returns the following error:...

jcfr

Remove Azure pipelines config file: GitHub actions replaced Azure pipelines and the corresponding config files were removed from the remote module template in: https://github.com/InsightSoftwareConsortium/ITKModuleTemplate/pull/90

jhlegarreta

Transition project configuration to `pyproject.toml`. Used the `setup-py-to-pyproject-toml.py` script in the `ITKModuleTemplate` repository: https://github.com/InsightSoftwareConsortium/ITKModuleTemplate as a starting base, then made manual changes as necessary. Require `itk == 5.4.*` and bump...

jhlegarreta