Medical-SAM2

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hello！ Is the model only able to process ".jpg", ".jpeg", ".JPG", and ".JPEG" formats? Can segmentation be performed directly on .nii files? Does 3D segmentation refer to a time series...

Vanityplunde

weihongbin1234567

predict

5

How do you make a direct prediction?

lucky-asia

使用自己的2d数据集时要如何修改，必须要分为训练测试验证三种吗，如何添加单次提示呢dataset代码需要修改吗

s597735

version `GLIBC_2.32'

9

python train_3d.py -net sam2 -exp_name BTCV_MedSAM2 -sam_ckpt ./checkpoints/sam2_hiera_small.pt -sam_config sam2_hiera_s -image_size 1024 -val_freq 1 -prompt bbox -prompt_freq 2 -dataset btcv -data_path ./data/btcv ImportError: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found (required by...

Meaw0415

RuntimeError: "view size is not compatible with input tensor's size and stride" during 2D training on Google Colab

2

I encountered an issue while training the 2D case on Google Colab. Here's the error message: `/content/Medical-SAM2/sam2_train/modeling/sam/transformer.py:22: UserWarning: Flash Attention is disabled as it requires a GPU with Ampere (8.0)...

ayyucedemirbas

Hello, I am very pleased that MEDSAM2 has contributed significantly to the growth of automatic segmentation models in the medical field. As a medical ultrasound researcher, I would like to...

dablro12

Inferencing issues in 3D: Code does not produce output for non-tracked frames

1

I wrote a script that is designed to process images from a specified folder and generate outputs based on the model's predictions. However, it appears that only frames being tracked...

ranjanjayapal

Simplified code for 2d inference

1

I adapted some of the func2D code to simplify 2D inference, and I thought it might be useful to other people, since this has been a common request in the...

saugatkandel

train3d.py- Implementation questions

1

Hello and thank you for providing us with the code of your paper. I have been experimenting with the 3D case and I have some questions regarding parts of the...

zapatistas