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PASS Variants Can Have Allele Frequency Exactly Zero

Open DarioS opened this issue 6 years ago • 1 comments

Some variants only have Tier 2 reads supporting them but PASS. This results in the strange situation of having a passing somatic variant with a high EVS score in the filtered VCF file, but an allele frequency of 0.00.

DarioS avatar Oct 03 '19 12:10 DarioS

I openned a similar issue but have not been resolved yet https://github.com/Illumina/strelka/issues/12

likelet avatar Jan 02 '20 12:01 likelet