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Some reported SV events has 0 support reads
Hi , I found during Manta running, there are some BND events who have zero support read pairs, but when I look at the bam file directly, I can actually see some reads about this BND. Any idea what caused this?
SVTYPE=BND;MATEID=MantaBND:318:0:1:0:0:0:0;CIPOS=0,13;HOMLEN=13;HOMSEQ=CCACCAGCTCTGC;BND_PAIR_COUNT=0;PAIR_COUNT=0
I observe the same issue with other SV types, and I would love to hear the answer. I emailed the developers, and never heard back. Perhaps someone will reply here.