IanCodes

Q: please explain the layout of the model shown in .model

1

How does the explanation of how decide whether the model (in .model) is correct relates to the statement in the readme. "The open state should have the highest emission parameters...

Plotting error

3

I have used conda (v0.3.2 and 0.5.0), and the recommended installation method using R devtools for ichorCNA. I used the runichorCNA.R script from version 0.3.2, as 0.5.0 on provides an...

epic-effective cannot find jellyfish

3

Hi, I have installed epic and jellyfish in a virtualenv: virtualenv venv.epic_0.1.25 . /path/venv.epic_0.1.25/bin/activate pip install bioepic pip install jellyfish When I try to run epic-effective as: epic-effective --read-length=76 --nb-cpu=12...

ERROR ~ Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)'

10

### Description of the bug My aim was to run rnasplice to output results for SUPPA2. It is not clear whether the following is an error on my part, or...

Why does the bedgraph output have 5 columns?

3

Hello, I am new to modkit, so I may be asking silly questions. The bedgraph generated using `modkit pileup --bedgraph` generates bedgraphs with five columns. The format description at [UCSC](https://genome.ucsc.edu/goldenPath/help/bedgraph.html)...