ontology-development-kit
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INCATools
Bootstrap an OBO Library ontology
The ODK should provide support to allow ontologies to manage their mappings with foreign ontologies. Based on what has already been implemented with Uberon, what is envisioned is: 1. Ontology...
Some feedback on our recent survey of OBO tools (shortened to essence) - I still struggle to find the tools and documentation about the tools - ODK documentation needs improving....
Possible solutions: - Is there a possibility of automating update ODK PR, perhaps using GH actions? Is this a good idea? - Setting up something that warns users when using...
> it reminds me again why we should not include equivalent classes in our ontology releases.. ever! That's a very radical statement. Definitely needs discussion given that some downstream resources...
We keep running into issues that conflict between logical and graph aspects in ontologies. It is unreasonable to believe that clients will be able to understand inferencing well enough to...
@rays22 add a line to https://github.com/INCATools/ontology-development-kit/blob/master/template/src/ontology/Makefile.jinja2#L574 to do yaml linting on all DOSDP pattern files. Dont forget to ensure that yamllint is added to the odklite requirements: https://github.com/INCATools/ontology-development-kit/blob/master/requirements.txt.lite
From @gouttegd: [original comment](https://github.com/INCATools/ontology-development-kit/pull/530#commitcomment-66885980) > If I was prone to nitpicking (which, unfortunately, I am), I‘d say that the `&&` here: ``` echo "Component is different, updating." && cp $(TMPDIR)...
cc @dosumis Next ODK, not this one, unless you put this on Anita.
For ROBOT templates and DOSDP tables. Thanks to @jamesaoverton to pointing me to the OBO normalisation script: https://github.com/obi-ontology/obi/blob/master/src/scripts/sort-templates.py