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INCATools
Bayesian OWL ontology merging
The mapping QC workflow is about reviewing the existing mappings on an ongoing basis. The idea is to review the bottom N clusters once per month and thereby implement an...
for text files see #157. Given: 1. Pr(A properSubClassOf C) = 0.99 2. Pr(A equiv B) = 0.95 3. Pr(B equiv C) = 0.95 (in each case, the only other...
Right now if two classes are forced to not be subclasses in either direction, this mapping won't be depicted in any way in the output images.
For working with boomer more seemlessly, it would be great if it could output the results as a table: ``` mapping_set_id: https://w3id.org/boomer/s8169763872632786387263 license: https://creativecommons.org/publicdomain/zero/1.0/ curie_map: UBERON: http... FMA: http... ```...
If I need to see the JSON or PNG of the report associating with an entry in `output.md`, I cannot directly find it without some `grep` on the command line....
Hey @balhoff ! I ran boomer on MONDO with just `exactMatches` and generated reports as seen [here](https://github.com/monarch-initiative/boomer-examples/tree/notebook/omim-ordo-do/boomer_output/mondo_exact). @matentzn and I just wanted to understand what these images mean. I'm going...
In * #185 We add obojson output, which can be fed into obographviz - but we don't really explain any of this on the README Also just general docs on...
allow providing prefixes declarations separate from list of prohibited within-namespace equivalents
Prefix declarations are needed for the input TSV. Right now inferred equivalents within these namespaces are also prohibited. @matentzn would like to be able to enable/disable that feature more selectively.
Consider this: - the user provides mappings in a ptable of the "exact" variety - then boomer applies these, but changes some of them to "subclassof" We should communicate this...