IBEXCluster

Results 6 comments of IBEXCluster

Dear @cerebis ### Here are my steps for Jellyfish 2.3.0 (latest, as of today) Python 3.x binding: Create a Python 3.x environment ``` $ curl -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh $ sh ./Miniconda3-latest-Linux-x86_64.sh...

Dear all, We have some workaround: ``` export DRMAA_LIBRARY_PATH=lib.slurm-22.05.6/libdrmaa.so.1 export LD_LIBRARY_PATH=lib.slurm-22.05.6:$LD_LIBRARY_PATH ``` This solution, helped us for launching job using Slurm-DRMAA!

Thanks to @wickhagj for fixing the bug in the Slurm-drmaa (https://github.com/natefoo/slurm-drmaa/commit/1f5db98cd788677e7a94b93cb56bc00266539fe2) The modifications are included in the master repo.

Dear @m-jahn Thanks for your recommendations. I was downloaded the `Kmerfinder database` from https://zenodo.org/records/13447056. However, this `kmerfinder` job step was failed to locate `bacteria.tax` and it's not part of the...

Many thanks @m-jahn for your recommendations. I noticed, the taxonomy file was unavailable at `ftp://ftp.cbs.dtu.dk/public/CGE/databases/KmerFinder/version/`. However, I was trying to install the required database from`KmerFinder` : `bash ~/kmerfinder/src/kmerfinder_db/INSTALL.sh $PWD bacteria...

Dear @LKeene I was able to get successful results when `conda` is used. For example, I was using `-profile conda` ``` nextflow run nf-core/fetchngs -r 1.12.0 -profile conda --input ids.csv...