Huangxc01

Thanks for your timely reply, I have resolved the error in my gff3 file. Thanks again!

> > The first thing need be checked is that the bam file for drawing heatmap was generated by mapping reads to contig level assembly, and the ID of contigs...

> @Huangxc01 for the data you post here, it may caused by the line 72 in the ALLHiC_plot, that we remove the '_pilon' while adding contig to the dictionary when...