Ackerman
Ackerman
Hi, I meeting some problem that all vriants was excluded as multiallelic. This doesn't seem to make sense: 1) It is impossible for multiallelic genes on a certain chromosome; 2)...
Hi, developer! I want to merge these columns: ``` FORMAT SRS971671 SRS971671_1 SRS971671_2 SRS971671_3 GT:PSV:LN:DR:ST:QV:TY:ID:RAL:AAL:CO 1/1:NA:5435:25,11:--:1740:INV:INV00000000:NA:NA:1_3-1_5438 ./.:NaN:0:0,0:--:NaN:NaN:NaN:NAN:NAN:NAN ./.:NaN:0:0,0:--:NaN:NaN:NaN:NAN:NAN:NAN 1/1:NA:5437:0,0:++:.:INV:SV_1_1:NA:NA:1_1-1_5438 GT:PSV:LN:DR:ST:QV:TY:ID:RAL:AAL:CO 1/1:NA:74:0,9:+-:180:DEL:DEL00000008:NA:NA:1_456034-1_456108 ./.:NaN:0:0,0:--:NaN:NaN:NaN:NAN:NAN:NAN 1/1:NA:79:0,9:+-:396:DEL:MantaDEL_39_0_1_0_0_0:GGCTCCCTCCGCCCCCCCCCCCCTGCCCCCCGCCCCCCCCCCCCCTCCCCCCCGCACCCCCCGCATCCCTCCCCCCTGAC:GTGGTGAGCG:1_456033-1_456112 1/1:NA:134:0,0:+-:.:DEL:SV_1179_1:NA:NA:1_455979-1_456113 GT:PSV:LN:DR:ST:QV:TY:ID:RAL:AAL:CO ./.:NaN:0:0,0:--:NaN:NaN:NaN:NAN:NAN:NAN ./.:NaN:0:0,0:--:NaN:NaN:NaN:NAN:NAN:NAN 0/1:NA:4393:23,15:+-:285:DEL:MantaDEL_44_0_1_0_0_0:NA:NA:1_480682-1_485075 0/1:NA:4416:0,0:+-:.:DEL:SV_4_1:NA:NA:1_480660-1_485076 GT:PSV:LN:DR:ST:QV:TY:ID:RAL:AAL:CO...
Hi, developor; I have a idea for merge vcf. I have a data set about 600 samples. For impove speed, I firstly merged 60 samples, and submit the ten times...