Hollyhlp

I made a database by using metagenomic sequencing data. However, when I chose this home-made fasta file as the database and run "start searching", it was always said "searching database...

Failed to correctly find or parse BAM file at "/tmp/coverm_fifo.tDWtDjcZrfy4/foo.pipe"

1

Hello, I was using coverm to calculate the reads count mapped to a few genomes. But i frequently met the following probelm. Would you please help me to take a...

bam_generator] Failed to correctly find or parse BAM file at "/tmp/coverm_fifo.wyqhN9T2ujOl/foo.pipe"

5

When using coverM, I met the following problem. May I know how to solve it? Thank you. 2022-08-02T06:51:55Z INFO coverm::mapping_index_maintenance] Generating BWA_MEM index for /tmp/.tmpzfBZeD .. [2022-08-02T07:14:01Z INFO coverm::mapping_index_maintenance] Finished...