Florian R. Hölzlwimmer

This applies especially to all info fields that are annotated with `Number=A` alias `one value per alternate allele`. Maybe it would be easier to have all allele-specific columns in one...

Thanks for your answer @henrydavidge. When we work with VCF's, we do so with one variant per row. Multiple alternate alleles at the same position is an edge case that...

Thanks a lot for putting so much effort into this issue @williambrandler! The notebook is really helpful :+1: Another idea I had was to call `bcftools` with `glow.transform`. Do you...

Hi @williambrandler, thanks for the note! Are there any plans to update to v3.2?

I was interested in trying out Spark 3.2, especially the parquet column index support: https://issues.apache.org/jira/browse/SPARK-26345 Beside of that, I was just confused why a point-update of Spark completely broke my...

The problem is that I cannot read parquet files any more ([see my first post](https://github.com/projectglow/glow/issues/423#issue-1032485233)). My intention was to have very fast response on joins `"variantID"` with parquet/PySpark.

Thank you for the update @williambrandler, looking forward to try it!

@karenfeng The issue that I had was that the option should be called `outDelimiter` instead of `out_delimiter`. However, I'm having another issue now. For some reason, the options `outNullValue` and...

The snake-case parsing of arguments makes it impossible to pass uppercase environment variables, right? E.g. `env_TEST` would get translated to `t_e_s_t`. Interestingly, passing `env_test_path='asdf'` results in an environment variable `test_path="asdf"`....

Ah, OK, I did not think of that solution :grin: