Florian R. Hölzlwimmer

Ah, I was talking about xcat-server running on Ubuntu 20.04, not about deployment. Should I open another issue for this?

@cxhong I tried installing via the instructions on the docs: https://xcat-docs.readthedocs.io/en/stable/guides/install-guides/apt/automatic_install.html However, there is simply no repository for `focal`, `bionic` is the latest: http://xcat.org/files/xcat/repos/apt/latest/xcat-core/dists/

Ah I see. The ubuntu 20.04 was installed by our IT administration. It's a virtual machine. I can only use it as-is. Thanks for the hint, I can try this....

Hi, are there any updates on this?

> Does cyvcf2 work for htslib 1.10+? I think some int32 function signatures might have changed. > > The dynamic linking works better in an "isolated" environment like bioconda, where...

Thanks a lot @brentp!

@ccwang002 As I understood, CYTHONIZE sounds like the solution to the bioconda problem: Whenever there's a new (supported) htslib version installed via conda, just re-run the cythonize to link to...

Thanks for your answer @hameerabbasi. My case is a bit special, because my fill value has a slightly different meaning than "non-existent". This is why I work with either masked...

you were 20s faster than me @hameerabbasi :smile: Yes, but it would be nice to have a general solution also for CSD :)

OK, thanks for the clarification. My workaround is fine enough for now as I'm using `sparse` only as a wrapper for my `COO` data. I was not sure if `sparse`...