Hmc1231

Thanks for getting back to me. I've now solved this problem by putting my nodif_brain_mask.nii.gz file in the subject13 folder rather than having it in the tractseg_output folder. unsure why...

with those upgrades it now returns: File "/miniconda3/envs/myenv/bin/plot_tractometry_results", line 20, in from tractseg.libs import plot_utils File "/miniconda3/envs/myenv/lib/python3.9/site-packages/tractseg/libs/plot_utils.py", line 22, in from tractseg.libs import fiber_utils File "/miniconda3/envs/myenv/lib/python3.9/site-packages/tractseg/libs/fiber_utils.py", line 10, in from...

I've now managed to get it to work by running it on a node with centos8 rather than centos7 which I had been running on. It still gives the error:...