HINGE

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Can this tool assemble a large genome?

1

Hi, I just have a question. Is this also possible for mammals with large genome sizes, such as human? If possible, I would like to use this tool.

okokookk

HINGE graph output

3

Hi guys, Is there way to convert the HINGE output to a format that can be used for [Bandage](https://github.com/rrwick/Bandage)? A format like spade's fastg? Thanks in advance, Ali

alimayy

Question: `clip` vc `clip-nanopore`?

2

I have a dazzler database with a combination of PacBio and Nanopore reads. Which of the `clip` options is more suitable in this case? Thank you in advance :)

spock

Error 'couldn't finish sparsification2522' at postprocessing step (hinge clip)

3

``` Run postprocessing:' Wed May 3 10:30:08 CEST 2017 Run postprocessing: Wed May 3 10:30:08 CEST 2017 + /home/ag/HINGE/inst/bin/hinge clip Stella.edges.hinges Stella.hinge.list hinge_3kb 0 bad coverage reads. 0 bad self...

agroppi

HINGE stalled and producing a huge empty error/ouput file

6

Hi, I'using HINGE to assemble a 260 Mb genome (PacBio reads RII - 56X coverage) Here is my script : [HINGE_Stella_Assembly_04_2017.zip](https://github.com/HingeAssembler/HINGE/files/957555/HINGE_Stella_Assembly_04_2017.zip) HINGE is running since 11 days, but since 4...

agroppi

Hi guys, Just wanted to let you know that last week I used HINGE with low-coverage parameters suggested by Ilan [here ](https://github.com/HingeAssembler/HINGE/issues/104#issuecomment-288573948) on 9,567 MinIon reads (min. length 8 Kb),...

alimayy

HINGE with PacBio CCS reads

5

Hi all, I've been trying to run HINGE using Circular Consensus Sequencing reads that are obtained after a Sequel run. As expected the number of reads decreases drastically due to...

alimayy

Could not find the following static Boost libraries: boost_graph

5

Hi, I got [here](https://travis-ci.org/bioconda/bioconda-recipes/jobs/196466226#L698) the following error: ``` Could not find the following static Boost libraries: boost_graph No Boost libraries were found. You may need to set BOOST_LIBRARYDIR to the...

mictadlo

Congratulations on the paper!

2

You made it! Very nice!

alimayy

Multiple CPU cores

3

Hi, Does HINGE support Multiple CPU cores, if yes then how many? Thank you in advance. Michal

mictadlo