HINGE

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How can I edit ./utils/build.sh so that it 'sees' hdf5.h while running?

5

I am trying to install HINGE on a new machine with ./utils/build.sh. It *almost* works without obvious errors, but fails to detect or use hdf5.h (which on this computer is...

SchwarzEM

Hi, all I want to get this added to bioconda, but it looks to me from the commit log that several bugs were fixed since the last release in 2017....

0xaf1f

Dear Hinge users community I got this error after run the hinge script: Traceback (most recent call last): File "/HINGE//inst/bin/../lib/hinge/get_draft_path.py", line 109, in vert_len = len(read_dict[int(vert_id)][1]) KeyError: 844 No idea...

jsimba-99

TypeError: must be str, not bytes in parse_read.py script

2

Hi, running hinge to assemble the chloroplast genome (~156kb) of a plant species after install and set up all the dependencies and scripts I got the following error: draft assembly...

jsimba-99

FileNotFoundError: [Errno 2] No such file or directory /C.odor_temp_.G2.graphml'

2

Hi, Im not familiar with programing rather interested in long reads cp genome assembly from plant DNA using Hinge I've got this error: **Traceback (most recent call last): File "/home/sesinchi/Sinchi/45_hingue/HINGE//inst/bin/../lib/hinge/get_draft_path.py",...

jsimba-99

Thank you for the code. Add support for architecture ppc64le. This is part of the Ubuntu distribution for ppc64le. This helps us simplify testing later when distributions are re-building and...

ddeka2910

Hi, I fail running the step ``` hinge filter --db ecoli --las ecoli.las -x ecoli --config ``` with the error: ``` ./hinge: line 10: Reads_filter: command not found ``` I...

sarah872

hinge on a large plant genome

1

Hello, we have ~30x coverage ONT (N50 9.3 kb, 165 Gb) of a ~5 Gb plant genome and we would like to assemble it with HINGE - we wonder if...

dcopetti

error message with hinge - no alignments

2

I have come almost to the end with the ecoli demo in hinge but not quite. I do not understand what could be the Problem and would appreciate some help....

gabster

cannot open ./reads.fasta for 'r'

11

when trying to download the ecoli reads for the Hinge demo, I get the following message: cannot open ./reads.fasta for 'r'. How can I solve this? Thanks, Gabi

gabster