Henri

produce gapless alingments

1

I am trying to get a gapless alignment of aligned sequences. Mismatches are fine, but I want to stop an alignment everytime there is a insertion or a deletion in...

Funannotate v188 update "Died on PASA_alignment_assembler.pm"

5

**Version** I am using funannotate 1.88, with singularity **Describe the bug** Funannotate update crashes on "/venv/opt/pasa-2.4.1/scripts/cDNA_annotation_comparer.dbi " error reading input file **What command did you issue?** `funannotate_v188.simg funannotate update -i...

Just wanted to share my updated sh script which automatically tries to re-run the failed contig construct mode. It tries until kmer 99, after that it copies the input fasta...

Effectiveness of --min_trim_size

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Hello, We are trying to get a hand on the demultiplexing part. According to the manual the --min_trim_size is the minimal size of the alignment against an adapter. With the...