HengkuanLi
HengkuanLi
hello, I am generating random regions based on 500,000 peaks as features, but the program has been running for 10 hours without stopping after generating a portion of the regions....
When quantified with stringtie, multiple lines were output from a gene. By looking at the gtf file, I found that these were different transcripts of the gene. How do I...
Hi, I have some questions regarding the use of hicTransform, and I would greatly appreciate your help. Thank you very much. 1. When generating the O/E matrix, should I use...
Hello, What exactly is the difference between the -w and -r in juicer_tools addNorm? After reading the official documentation, I'm still very confused. I would appreciate your help in clarifying...
HiC-Pro_3.1.0/scripts/ice:65: SyntaxWarning: "is" with a literal. Did you mean "=="? if "--filtering_perc" is None and "--filter_low_counts_perc" not in sys.argv: Hic-pro-3.1.0/lib/python3.8/site-packages/iced/normalization/_ca_utils.py:8: UserWarning: The API of this module is likely to change....