HelloWorldLTY

Hi, same question here. The authors seem to believe that data with known combination but different dosage are OOD data, shown in the default tutorial. This should work since dosage...

Just notice that they have a version with drug embeddings database, which would at least allow us to predict the contributions of drugs in this database: https://colab.research.google.com/github/theislab/cpa/blob/master/docs/tutorials/combosciplex_Rdkit_embeddings.ipynb#scrollTo=79062e65-3de9-4916-8999-449ef2df3edf

Thanks for your notes, just clarified my words.

Hi, thanks for your great work! I wonder if it is possible for me to only run certain methods (for example, GLM based model) on certain datasets. Thanks a lot....

Hi, yes, I initially agree with you about using KNN metric to evaluate it. However, do you think, given the plots I have in the paper GLM-PCA, the normalization method...

Hi, another question, now I meet some errors to run [Rscript -e "renv::restore()"](https://rstudio.github.io/renv/reference/restore.html) in a new environment. May I know your R version? Thanks a lot.

Hi, actually plenty of errors. In most of the cases, its package installing error. I meet this error for stirngi, deseq2, biostringi, etc. Now I use R4.2.3 and I am...

> Hi mjcasy, > > > I was wondering what is the best way to run your benchmarking on a single other transformation? > > The general steps are to...

> I was faced with the same issue and managed to solve it by installing a previous version of `scipy`. It appears that from version 1.13.0 (the one I had...

Hi, it seems that I also cannot install the cuda version of jax: WARNING: jax 0.4.23 does not provide the extra 'cuda11-pip' Based on the codes provided in the read...