HeejunJang

Hello, Here's my information. 1. conda 22.9.0 2. conda update --all conda install cnvkit 3. - conda-forge - bioconda - defaults 4. channel_priority: flexible I'll try with your suggestion and...

Hello, I installed with "conda create -n cnvkit -c conda-forge -c bioconda cnvkit" and did "conda activate cnvkit" But, Simmilar error occured before I ran cnvkit.py (source version) without conda...

Hello @tetedange13 I followed all your latest guidelines and used --Rscript-path option PermissionError: [Errno 13] Permission denied: '/usr/bin/anaconda3/envs/cnvkit/lib' It seems cnvkit can't access my R path thank you.

> Hi @tetedange13 and @HeejunJang, I resolved the issue with downgrading python from 3.10 to 3.9 and R version from 4.2.2 to 4.1.1. I am attaching Dockerfile which worked fine...

Hello, I installed from source.tar.gz. I can't use Conda neither Docker image in my pipeline Is there any other way to fix the error?

Hello, I did it the way you told me. $ Rscript --help Usage: /path/to/Rscript [--options] [-e expr [-e expr2 ...] | file] [args] --options accepted are --help Print usage and...

Still got same error. It seems CNVkit is missing R package directory.

@28rietd Thanks for the advice. But I doesn't work with same error.