HastingsGreer

DOC: warning for calling GetImageViewFromArray on non-contiguous array

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There's a bit of a foot-gun in GetImageViewFromArray, where if you pass it a non-contiguous array, it makes a contiguous copy of that array and returns an image view of...

Calling python itk.meshread on the linked file causes itk to segfault.

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### Description Calling python itk.meshread on the linked file causes itk to segfault. ### Steps to Reproduce Download https://github.com/uncbiag/OAI_analysis_2/blob/oh-no/meshR.vtk import itk itk.imread("meshR.vtk") ### Actual behavior >>> itk.meshread("Downloads/meshR.vtk") zsh: segmentation fault...

### Description When you index into a numpy array and think you got an integer, you actually get a numpy.int64. python ints and numpy.int64 are almost indistinguishable, but If you...

Add ICON, GradICON, and ConstrICON. Work in Progress

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Description: This pull request adds monai based implementations of the following papers: Inverse Consistency by Construction for Multistep Deep Registration. Hastings Greer, Lin Tian, Francois-Xavier Vialard, Roland Kwitt, Sylvain Bouix,...

Evaluation with run.py fails

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Thank you for publishing this code! run.py fails on my system with ``` venv) tgreer@biag-w05:/playpen-raid1/tgreer/equivariant_reg_2/keymorph_comparison/keymorph$ python run.py --kp_align_method affine --num_keypoints 128 --loss_fn mse --eval --load_path ./weights/numkey128_aff_dice.1560.h5 {'affine_slope': -1, 'batch_size': 1,...

This appears to fix https://github.com/alanqrwang/keymorph/issues/13

The original code validated against known good thickness measurements here: https://github.com/uncbiag/OAI_analysis/blob/master/validate_thickness_results.py We should do the same.