plot1cell

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Error in the expression

5

Hi, Thank you for the wonderful package. I was plotting the expression of genes using the fucntion: complex_dotplot_single(seu_obj =sobj, feature = "gene1", groups = "condition") I get no expression of...

apal6

Error in anno_zoom using complex_heatmap_unique()

1

I encountered an error when I used "complex_heatmap_unique" function as follows: complex_heatmap_unique(sce4, celltype = "10", group = "Group", gene_highlight = c("CDK1")) Error in anno_zoom(...) : unused arguments (add_new_line = TRUE,...

pandaqiuqiu

object 'UMAP1' not found when running complex_featureplot

2

When I ran the complex_featureplot function, I encountered the following error: complex_featureplot(object, features = genes, group = "Group", order = T) "Error in geom_point(): ! Problem while computing aesthetics. i...

pandaqiuqiu

"colors" setting in "add_track"

5

Thank you for the development of Plot1Cell. This issue is related to [issue #6](https://github.com/HaojiaWu/plot1cell/issues/6). Here, I set the collor for `plot_circlize` and `add_track`. The `plot_circlize` works perfectly. But the `add_track`...

grimwoo

add_track width etc

3

Hi, I wonder if any parameter has been implemented to modify the width, and font size in the add_track function? Thanks.

joe-jhou2

UMAP contours get cut off

2

Hi, Thanks for developing this great visualization tool. When plotting the circlize plot, I am noticing that the UMAP contours are getting cut off in a square shape within the...

allenyen

UMAP overlap with circ

4

 Any parameter can adjust circle size?

joe-jhou2

Error: Cannot find 'umap' in this Seurat object

1

Hi! This is my code complex_dotplot_single(seu_obj = seurat_object, feature = "Havcr1", groups = "group2") Error: Cannot find 'umap' in this Seurat object Dimensional reduction for visualization was performed using tSNE...

tu12dou

Ensembl site unresponsive when using creat_cellphonedb_file() function

2

When I use the creat_cellphonedb_file() function to generate the input files for CellPhoneDB, I encountered the following error: `creat_cellphonedb_file(sce, Sample)` Ensembl site unresponsive, trying asia mirror Ensembl site unresponsive, trying...

pandaqiuqiu