nanoflow
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HadrienG
:microscope: De novo assembly of nanopore reads using nextflow
I'm planning to add hyrbid assembly capabilities to nanoflow. This issue will serve as to-do list - [ ] illumina read trimming - [ ] hybrid assembly with unicycler -...
Looking at https://github.com/rrwick/Basecalling-comparison/blob/master/nanopolish_slurm_wrapper.py there are several improvements that can be made to the polishing. Do we need more options for the user here? Is our polishing to simple? Should we...
Looking at what we know from polishing some sort of statistics for how well the polishing went might be useful. Can this be implemented in a meaningful way?
Just a thought. Feel free to close this issue if the idea doesn't interest you. See for example https://github.com/sjackman/abyss-drosophila-melanogaster
