Griffan(Fan Zhang)

Hi, @bwlewis is the name of the technique used here "Rank Update or Incremental SVD" or something else?

Hi, @biork. I have tried to reproduce this problem using our internal dataset but failed. Could you please share with us your: version number, cmdline, and maybe a few fastq...

Could you provide more information about your system and the htslib version?

Hi, @xie186 If your specific mouse genome is diploid, in principle this tool can be applied to your files. However, the resource files require a diverse population level genotype VCF...

Hi, @iagooteroc The presence of CHIPMIX field in the final report is for backward compatibility with VB1. VB2 itself doesn't have an option to accept the genotype info for the...

Ideally, this can be done by iteratively querying against each of these candidate samples. In practice, this might be related to the absolute depth and contamination level. This functionality has...

Yes, you are right. But at the moment we have not enough hands to amend this feature. You are more than welcome to help to contribute to this package. Otherwise,...

Unfortunately no, if you finished this script, you can try to create a pull request. Thanks!

Thanks for the feedback! At the moment for the sake of backward compatibility, I would recommend you to keep using 1.11. and I will try to draft a commit to...

Could you provide more details about your environment?