Gonzalo Greif

icon indicating a website link http://www.cruzi.pasteur.uy

icon location Montevideo, Uruguay icon location I am a Senior Researcher at the Institut Pasteur de Montevideo, specializing in molecular biology, genomics, and host-pathogen interactions. I obtained my Biolo

Results 3 issues of Gonzalo Greif

running minigraph

1 comment

Hi, Yesterday I run minigraph without problem, now I try to run with two genomes but I have this error /home/nanocruzi/installs/minigraph/minigraph -cxggs -t8 refGenome.fasta JJ_Genoma.fasta A_Genoma.fasta > Refvstwo.gfa [M::main::0.105*1.00] loaded...

delta files problem

3 comment

Open new issue. I dont really make changes to the output of nucmer. I run as assemblytics webpage indicates: nucmer --maxmatch -l 100 -c 500 TcDm25_H1.fasta Dm28c_v4.fasta -p Dm28vsH1 and...

CDS and protein

I installed gffread and make first this command: gffread -w transcript.fa -g Genome.fasta Anotacion.gff and looks ok (all the CDS transcripts starts with ATG) then I tried: gffread -y proteins.pep...