David Godlove

Add e2e test for when a user does not have a home directory

3

There is an e2e test for the situation in which a user's home directory is not writable, but there does not seem to be a test for the situation in...

Add --remote (or similar) option/arg to commands like push

3

## Version of Singularity: 3.3.0-rc.1.436.gfdf86b487 ### Problem Right now, the `push` command (and others) can only interact with the default library as determined by the `remote.yaml` configuration files. Consider a...

Query a container before initialization from within a plugin

3

## Version of Singularity: 3.2.1 ### Expected behavior There should be a way to query information about a container before running the plugin. For instance, it would be nice to...

How to set env vars in containers via plugins

4

## Version of Singularity: 3.2.1 ### Expected behavior It is straightforward to write a plugin that sets new environment variable(s) within the container at runtime. ### Actual behavior @AdamSimpson has...

specify binds in sif file

7

## Version of Singularity: 3.0.1 ### Expected behavior It would be really nice if we could specify what directories need to be mounted at container creation, and then those containers...

Issue better error when there is not enough space on /tmp to build

3

## Version of Singularity: 2.5.1 ### Expected behavior Get an error along the lines of: ``` There is not enough space on /tmp to stage building of a singularity image...

### Version of Apptainer ``` $ apptainer --version apptainer version 1.0.3 ``` In my testing, this also affects v1.0.0 as well as sylabs/singularity-ce v3.10.2 and v3.8.4. These are all the...

include sample data and a working example

12

I am an HPC support scientist who has been asked to install this pipeline on a user's behalf. I have no domain knowledge and cannot work out how to test...

'NoneType' object has no attribute 'group'

4

I'm seeing the following: ``` $ evcouplings -p RASH_HUMAN -P /data/${USER}/ev_out_files -b "0.3,0.5,0.7" sample_config_monomer.txt Traceback (most recent call last): File "/opt/conda/bin/evcouplings", line 8, in sys.exit(app()) File "/opt/conda/lib/python3.7/site-packages/click/core.py", line 829, in...

can't delete sif from OCI registry pushed using oras

8

### Version of Apptainer ``` $ apptainer --version apptainer version 1.0.3 ``` ### Expected behavior After pushing a container to an OCI registry via oras, I expect to use `apptainer...