David Godlove
David Godlove
SCIF_ variable paths are broken: Forced underscore doesn't match instantiated paths (having dashes).
So, the history on scif (afaik), is that @vsoch created the standard originally as part of Apptainer, (then Singularity). So Apptainer is basically the birth place of scif. (V can...
I spun up an Ubuntu 22 VM, but I was unable to replicate the issue that you are seeing. It seems like `/etc/resolv.conf` can't be bind-mounted into the container for...
Oh that is interesting. I was unable to replicate on my Jammy install. Here if the version of `fuse-overlayfs` I'm running: ``` $ fuse-overlayfs --version fuse-overlayfs: version 1.7.1 FUSE library...
OK, yeah I'm able to replicate the error too. ``` demouser@jammy:~$ apptainer build /tmp/nginx.sif docker://nginx INFO: Starting build... Getting image source signatures Copying blob 27e923fb52d3 done Copying blob e42dcfe1730b done...
Are you port-forwarding from your local machine to the login node and from the login node to the compute node?
Can you be more specific? When you say "it fails" does this mean it gives you a 404 or a 401 or a black screen or something else? The port...
What about this? ``` $ export FOO=bar $ APPTAINERENV_FOO=$FOO apptainer shell --cleanenv docker://alpine INFO: Using cached SIF image Apptainer> env LD_LIBRARY_PATH=/.singularity.d/libs SHLVL=1 HOME=/home/user PS1=Apptainer> APPTAINER_ENVIRONMENT=/.singularity.d/env/91-environment.sh SINGULARITY_ENVIRONMENT=/.singularity.d/env/91-environment.sh TERM=xterm-256color PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin APPTAINER_COMMAND=shell FOO=bar...
>Another way to approach this would be to provide an allowlist to be used in conjunction with --cleanenv. Sorry I thought the method I am suggesting was exactly what you...
We discussed this issue and the associated PR (#1622) in the community meeting today. @DrDaveD asked me to create a new issue, but I thought it better to continue on...
The second error above is actually complaining that `sequence_extract.py` doesn't exist. Seems like there is an underlying issue with the `/data` path. The first error is complaining about `/data2`. Is...