GhostInTheShellwjc
GhostInTheShellwjc
I am wondering whether the MAD should be calculated individually if there are many batches in adata.And if the coverage of sequencing is low in some batches,it may raise the...
Hello！In func ov.utils.roe，the threshold is different with the article（ https://www.nature.com/articles/s41586-018-0694-x ) and it doesn't consider fisher exact test if there is a cluster of cells which has the number under...
The issue of #226 has not been resolved yet. The tutorial or the func should be altered. When the gseapy version 1.1.3 is additionally installed, the plot_gsea function still lacks...
In fact,the params bbox_to_anchor_used，node_diameter have been deleted in func pyGSEA.plot_enrichment,and it should be deleted in the tutorial "Different Expression Analysis with DEseq2".Maybe the tutorial should be updated since many funcs...
**Describe the bug** AttributeError: can't set attribute 'categories' **To Reproduce** I use omicverse=1.6.7,and I want to run the code in [16] in jupyter of vscode(The code is from your example(Readthedocs...
Sometimes,function ov.pp.scale() doesn't work and it raises NotImplementedError:float 16.However,function sc.pp.scale() works.It is strange because two functions seem to be the same in their approachs.Hopefully the problem could be solved.Thanks! code:...
The GSEApy package is excellent, and it would be even more perfect if these additional features could be implemented! 1. Is it possible to add a gene capitalization pre-check feature...