gesmira

Results 46 comments of gesmira
trafficstars

Error in validObject(.Object) : invalid class "LogMap" object: Duplicate rownames not allowed

@ianleo1993 Can you provide a reproducible example, the output of sessionInfo() and a detailed explanation?

assay' must be a v5 or SCT assay on ATAC integration

Hi, Please let us know if you're able to provide an object. Otherwise, we will close the issue shortly.

assay' must be a v5 or SCT assay on ATAC integration

Hi @Nh-code, this seems to be a different issue. Please open a new issue with a reproducible example, all of the code you ran that led to this error, as...

ProjectData meeting error:

Hi @yanwuanxin, No, you do not have to call `RunUMAP` again once the sketched UMAP has been projected to the full object. @rschauner thank you for your comments! We are...

How to make Seurat layers in a Seurat object list?

Hi, closing now due to lack of response. Feel free to reopen if errors persist!

Using FindMarkers, no longer need to indicate assay = "RNA", or what is going on?

Hi, Due to the lack of response from the original poster, we are closing this issue for now. If you continue to run into the issue, please consider reposting with...

How to add image to SeuratObject of CosMx data, which was created in AtoMx SIP web platform?

Hi @hjbp0610 , Thank you for reaching out! We’re always grateful when folks take the time to post issues and help make Seurat better 🙂 Unfortunately, with the details provided,...

Inconsistent Clusters with same R script

Hi @hjbp0610, Thank you for reaching out! We’re always grateful when folks take the time to post issues and help make Seurat better 🙂 Unfortunately, with the details provided, we...

BuildClusterTree _ The `slot` argument of `AverageExpression()` is deprecated as of Seurat 5.0.0.

This should be fixed now. Please post a new issue is you continue to run into problems. Thanks!

IntegrateLayers() ISSUE with small dataset: Error in idx[i, ] <- res[[i]][[1]]: number of items to replace is not a multiple of replacement length

Thanks @Alexis-Varin for your response! Some more details as well here: https://github.com/satijalab/seurat/issues/7727.